Genetic background modifies phenotype |
• Backcross to defined genetic background, with matched wild-type controls |
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• Generate multiple independent lines |
High background “noise” due to overlapping substrate specificities between, or structural homology within, gene families |
• Delete endogenous interfering genes (may be technically difficult if several spread throughout the genome) |
Species differences in gene regulation |
• Express transgene under endogenous promoter |
Integration position affects genotype |
• Generate multiple independent lines |
Gene deletion is embryonic lethal or causes significant welfare problems |
• Use conditional deletion (i.e., Cre/LoxP) |
Residual activity remains after gene targeting (i.e., truncated protein acts as dominant negative) |
• Delete gene completely |