Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Universal Root Woese et al. 1990 Bacteria (None 2015) Woese et al. 1990 Proteobacteria (sic) Garrity et al. 2021 Pseudomonadota corrig. Garrity et al. 2021 Alphaproteobacteriota (sic) Garrity et al. 2021 Gammaproteobacteria Garrity et al. 2005 emend. Williams and Kelly 2013 Enterobacterales (Garrity and Holt 2001) Adeolu et al. 2016 Enterobacteriaceae Rahn 1984 emend. Adeolu et al. 2016 Salmonella Lignieres 1900 emend. Le Minor and Rohde 1974 (Approved Lists 1980) Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica arizonae (Borman 1957) Le Minor and Popoff 1987 Salmonella enterica bongori (Le Minor et al. 1985) Le Minor and Popoff 1987 Salmonella enterica diarizonae (Le Minor et al. 1985) Le Minor and Popoff 1987 Salmonella enterica houtenae (Le Minor et al. 1985) Le Minor and Popoff 1987 Salmonella enterica indica (Le Minor et al. 1987) Le Minor and Popoff 1987 Salmonella enterica salamae (Le Minor et al. 1985) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Agona Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Saint Paul Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Paratyphi A Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 McClelland M. Sanderson K.E. Clifton S.W. Latreille P. Porwollik S. Sabo A. Meyer R. Bieri T. Ozersky P. McLellan M. Harkins C.R. Wang C. Nguyen C. Berghoff A. Elliott G. Kohlberg S. Strong C. Du F. Carter J. Kremizki C. Layman D. Leonard S. Sun H. Fulton L. Nash W. Miner T. Minx P. Delehaunty K. Fronick C. Magrini V. Nhan M. Warren W. Florea L. Spieth J. Wilson R.K. Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid 2004 36 1268 1274 Nature Genetics Nat Genet 1061-4036 1546-1718 10.1038/ng1470 15531882 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Gallinarum Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Hadar Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Rubislaw Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Heidelberg Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Javiana Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Saint Paul Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Mississippi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Dublin Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Allard M.W. Luo Y. Strain E. Pettengill J. Timme R. Wang C. Li C. Keys C.E. Zheng J. Stones R. Wilson M.R. Musser S.M. Brown E.W. On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004. 2013 8 1 e55254 e55254 PLoS One 1932-6203 10.1371/journal.pone.0055254 23383127 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Gallinarum Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Enteritidis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Paratyphi B Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Alachua Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhimurium Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Sendai Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Indiana Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhimurium Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Paratyphi B Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Schwarzengrund Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Tennessee I Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhimurium Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Seftenberg Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Muenchen Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Typhimurium Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Agona Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Adelaide Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Choleraesuis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Weltevreden Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Minnesota Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Paratyphi C Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liu W.Q. Feng Y. Wang Y. Zou Q.H. Chen F. Guo J.T. Peng Y.H. Jin Y. Li Y.G. Hu S.N. Johnston R.N. Liu G.R. Liu S.L. Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi 2009 4 e4510 PLoS One 1932-6203 10.1371/journal.pone.0004510 19229335 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Virchow Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Typhimurium Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Jarvik T. Smillie C. Groisman E.A. Ochman H. Short-term signatures of evolutionary change in the Salmonella enterica serovar typhimurium 14028 genome 2010 192 560 567 Journal of Bacteriology J Bacteriol 0021-9193 1098-5530 10.1128/JB.01233-09 19897643 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Schwarzengrund Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Choleraesuis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Tennessee Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Newport Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Urbana Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Give Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Muenster Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Heidelberg Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Enteritidis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Newport Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Gallinarum Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Allard M.W. Luo Y. Strain E. Pettengill J. Timme R. Wang C. Li C. Keys C.E. Zheng J. Stones R. Wilson M.R. Musser S.M. Brown E.W. On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004. 2013 8 1 e55254 e55254 PLoS One 1932-6203 10.1371/journal.pone.0055254 23383127 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Dublin Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Allard M.W. Luo Y. Strain E. Pettengill J. Timme R. Wang C. Li C. Keys C.E. Zheng J. Stones R. Wilson M.R. Musser S.M. Brown E.W. On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004. 2013 8 1 e55254 e55254 PLoS One 1932-6203 10.1371/journal.pone.0055254 23383127 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Gallinarum Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Thomson N.R. Clayton D.J. Windhorst D. Vernikos G. Davidson S. Churcher C. Quail M.A. Stevens M. Jones M.A. Watson M. Barron A. Layton A. Pickard D. Kingsley R.A. Bignell A. Clark L. Harris B. Ormond D. Abdellah Z. Brooks K. Cherevach I. Chillingworth T. Woodward J. Norberczak H. Lord A. Arrowsmith C. Jagels K. Moule S. Mungall K. Sanders M. Whitehead S. Chabalgoity J.A. Maskell D. Humphrey T. Roberts M. Barrow P.A. Dougan G. Parkhill J. Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways 2008 18 1624 1637 Genome Research Genome Res 1088-9051 1549-5469 10.1101/gr.077404.108 18583645 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Enteritidis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Heidelberg Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Johannesburg Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Gaminara Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Newport Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Infantis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Schwarzengrund Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Hvittingfoss Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhimurium Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Paratyphi B Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Kentucky Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Uganda Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Wandsworth Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Abortusovis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Inverness Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Pullorum Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Brandenburg Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Baildon Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Paratyphi A Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Holt K.E. Thomson N.R. Wain J. Langridge G.C. Hasan R. Bhutta Z.A. Quail M.A. Norbertczak H. Walker D. Simmonds M. White B. Bason N. Mungall K. Dougan G. Parkhill J. Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi 2009 10 36 BMC Genomics 1471-2164 10.1186/1471-2164-10-36 19159446 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Dublin Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Poona Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Muenster Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Newport Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella typhi (Schroeter 1886) Warren and Scott 1930 (Approved Lists 1980) Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Parkhill J. Dougan G. James K.D. Thomson N.R. Pickard D. Wain J. Churcher C. Mungall K.L. Bentley S.D. Holden M.T. Sebaihia M. Baker S. Basham D. Brooks K. Chillingworth T. Connerton P. Cronin A. Davis P. Davies R.M. Dowd L. White N. Farrar J. Feltwell T. Hamlin N. Haque A. Hien T.T. Holroyd S. Jagels K. Krogh A. Larsen T.S. Leather S. Moule S. O'Gaora P. Parry C. Quail M. Rutherford K. Simmonds M. Skelton J. Stevens K. Whitehead S. Barrell B.G. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 2001 413 848 852 Nature 0028-0836 1476-4687 10.1038/35101607 11677608 Deng W. Liou S.R. Plunkett G. Mayhew G.F. Rose D.J. Burland V. Kodoyianni V. Schwartz D.C. Blattner F.R. Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18 2003 185 2330 2337 Journal of Bacteriology J Bacteriol 0021-9193 1098-5530 10.1128/JB.185.7.2330-2337.2003 12644504 Panama Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Miami Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Enteritidis Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Thomson N.R. Clayton D.J. Windhorst D. Vernikos G. Davidson S. Churcher C. Quail M.A. Stevens M. Jones M.A. Watson M. Barron A. Layton A. Pickard D. Kingsley R.A. Bignell A. Clark L. Harris B. Ormond D. Abdellah Z. Brooks K. Cherevach I. Chillingworth T. Woodward J. Norberczak H. Lord A. Arrowsmith C. Jagels K. Moule S. Mungall K. Sanders M. Whitehead S. Chabalgoity J.A. Maskell D. Humphrey T. Roberts M. Barrow P.A. Dougan G. Parkhill J. Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways 2008 18 1624 1637 Genome Research Genome Res 1088-9051 1549-5469 10.1101/gr.077404.108 18583645 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Dublin Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Montevideo Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Kentucky Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Paratyphi C Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Liolios K. Chen I.M. Mavromatis K. Tavernarakis N. Hugenholtz P. Markowitz V.M. Kyrpides N.C. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata 2010 38 D346 354 Nucleic Acids Research Nucleic Acids Res. 0305-1048 1362-4962 10.1093/nar/gkp848 19914934 Typhi Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella typhi (Schroeter 1886) Warren and Scott 1930 (Approved Lists 1980) Chang H.R. Loo L.H. Jeyaseelan K. Earnest L. Stackebrandt E. Phylogenetic relationships of Salmonella typhi and Salmonella typhimurium based on 16S rRNA sequence analysis 1997 47 4 1253 1254 International Journal of Systematic Bacteriology Int J Syst Bacteriol 0020-7713 10.1099/00207713-47-4-1253 9336938 Skerman V.B.D. McGowan V. Sneath P.H.A. Approved Lists of Bacterial Names 1980 30 1 225 420 International Journal of Systematic Bacteriology Int J Syst Bacteriol 0020-7713 10.1099/00207713-30-1-225 Tindall B.J. Grimont P.A.D. Garrity G.M. Euzéby J.P. Nomenclature and taxonomy of the genus Salmonella 2005 55 1 521 524 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/ijs.0.63580-0 15653930 Deng W. Liou S.R. Plunkett G. Mayhew G.F. Rose D.J. Burland V. Kodoyianni V. Schwartz D.C. Blattner F.R. Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18 2003 185 2330 2337 Journal of Bacteriology J Bacteriol 0021-9193 1098-5530 10.1128/JB.185.7.2330-2337.2003 12644504 This strain was re-accessioned as ATCC 700931. The equivalence of this strain to the type deposit of Salmonella typhi is questionable. Typhimurium Salmonella enterica enterica (Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 McClelland M. Sanderson K.E. Spieth J. Clifton S.W. Latreille P. Courtney L. Porwollik S. Ali J. Dante M. Du F. Hou S. Layman D. Leonard S. Nguyen C. Scott K. Holmes A. Grewal N. Mulvaney E. Ryan E. Sun H. Florea L. Miller W. Stoneking T. Nhan M. Waterston R. Wilson R.K. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 2001 413 852 856 Nature 0028-0836 1476-4687 10.1038/35101614 11677609 Judicial Commission of the International Committee on Systematics of Prokaryotes The type species of the genus Salmonella Lignieres 1900 is Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987, with the type strain LT2, and conservation of the epithet enterica in Salmonella enterica over all earlier epithets that may be applied to this species. Opinion 80 2005 55 1 519 520 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/ijs.0.63579-0 15653929 Iida K. Abe A. Matsui H. Danbara H. Wakayama S. Kawahara K. Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot-blot hybridization 1993 114 167 172 FEMS Microbiology Letters FEMS Microbiol Lett 0378-1097 1574-6968 8282185 rrsH: AE006468:{289189-290732} rrsG: AE006468:{2800118-2801660} (complement) rrsD: AE006468:{3570463-3572006} (complement) rrsC: AE006468:{4100132-4101675} rrsA: AE006468:{4196059-4197600} rrsB: AE006468:{4351130-4352673} rrsE: AE006468:{4394675-4396219} Note: rrsF is 5S rRNA The deposit CCUG 42060 was verified by ATCC. Le Minor L. Popoff M.Y. Request for an Opinion. Designation of Salmonella enterica sp. nov., nom. rev., as the type and only species of the genus Salmonella. 1987 37 4 465 468 International Journal of Systematic Bacteriology Int J Syst Bacteriol 0020-7713 10.1099/00207713-37-4-465 Salmonella typhimurium (Loeffler 1892) Castellani and Chalmers 1919 (Approved Lists 1980) Salmonella enteritidis (Gaertner 1888) Castellani and Chalmers 1919 (Approved Lists 1980) Salmonella typhi (Schroeter 1886) Warren and Scott 1930 (Approved Lists 1980) Salmonella choleraesuis choleraesuis corrig. (Smith 1894) Le Minor et al. 1985 Salmonella paratyphi (ex Kayser 1902) Ezaki et al. 2000 Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 Le Minor L. Popoff M.Y. Request for an Opinion. Designation of Salmonella enterica sp. nov., nom. rev., as the type and only species of the genus Salmonella. 1987 37 4 465 468 International Journal of Systematic Bacteriology Int J Syst Bacteriol 0020-7713 10.1099/00207713-37-4-465 Ezaki T. Kawamura Y. Yabuuchi E. Recognition of nomenclatural standing of Salmonella typhi (Approved Lists 1980), Salmonella enteritidis (Approved Lists 1980) and Salmonella typhimurium (Approved Lists 1980), and conservation of specific epithets enteritidis and typhimurium. Request for an Opinion 2000 50 2 945 947 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/00207713-50-2-945 10758910 Labeda D.P. International Committee on Systematic Bacteriology IXth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 14 and 17 August 1999, Sydney, Australia. 2000 50 6 2245 2247 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/00207713-50-6-2245 Kauffmann F. Edwards P.R. Classification and nomenclature of Enterobacteriaceae 1952 2 1 2 8 International Bulletin of Bacteriological Nomenclature and Taxonomy Int Bull Bacteriol Nomencl Taxon 0096-266X 10.1099/0096266X-2-1-2 Judicial Commission of the International Committee on Systematics of Prokaryotes The type species of the genus Salmonella Lignieres 1900 is Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987, with the type strain LT2, and conservation of the epithet enterica in Salmonella enterica over all earlier epithets that may be applied to this species. Opinion 80 2005 55 1 519 520 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/ijs.0.63579-0 15653929 Euzéby J.P. Revised Salmonella nomenclature: designation of Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 sp. nov., nom. rev. as the neotype species of the genus Salmonella Lignieres 1900 (Approved Lists 1980), rejection of the name Salmonella choleraesuis (Smith 1894) Weldin 1927 (Approved Lists 1980), and conservation of the name Salmonella typhi (Schroeter 1886) Warren and Scott 1930 (Approved Lists 1980). Request for an Opinion. 1999 49 2 927 930 International Journal of Systematic Bacteriology Int J Syst Bacteriol 0020-7713 10.1099/00207713-49-2-927 Yabuuchi E. Ezaki T. Arguments against the replacement of type species of the genus Salmonella from Salmonella choleraesuis to ‘Salmonella enterica’ and the creation of the term ‘neotype species’, and for conservation of Salmonella choleraesuis 2000 50 4 1693 1694 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/00207713-50-4-1693 10939679 De Vos P. Trüper H.G. Judicial Commission of the International Committee on Systematic Bacteriology IXth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 14, 15 and 18 August 1999, Sydney, Australia 2000 50 6 2239 2244 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/00207713-50-6-2239 Ezaki T. Amano M. Kawamura Y. Yabuuchi E. Proposal of Salmonella paratyphi sp. nov., nom. rev. and request for an opinion to conserve the specific epithet paratyphi in the binary combination Salmonella paratyphi as nomen epitheton conservandum. 2000 50 2 941 944 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/00207713-50-2-941 10758909 Tindall B.J. Grimont P.A.D. Garrity G.M. Euzéby J.P. Nomenclature and taxonomy of the genus Salmonella 2005 55 1 521 524 International Journal of Systematic and Evolutionary Microbiology Int J Syst Evol Microbiol 1466-5026 1466-5034 10.1099/ijs.0.63580-0 15653930 TODO (garrity): RFO - We differ with the Judicial Opinion on the authority (we dropped "ex" because this is not a revived name).