<?xml version="1.0" ?>
<!--
  (c) 2024, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy).
  All rights reserved.

  CLOCKSS system has permission to ingest, preserve, and serve this Archival Unit.
  LOCKSS system has permission to ingest, preserve, and serve this Archival Unit.

  This content is licensed under a Creative Commons Attribution 3.0 International license: https://creativecommons.org/licenses/by/3.0/
-->
<taxon doi="10.1601/tx.5336" rank="subspecies" xmlns="http://namesforlife.com/ns/taxon">
  <nomenclature xmlns="http://namesforlife.com/ns/common">
    <name-status-group>
      <identifier doi="10.1601/nm.5336" nomenclatural-type-exemplar="10.1601/ex.5336" rank="subspecies" taxon-doi="10.1601/tx.5336">Lactobacillus aviarius araffinosus</identifier>
      <authority>Fujisawa et al. 1986</authority>
      <status candidatus="false" conserved="false" current-name="Ligilactobacillus araffinosus" current-name-doi="10.1601/nm.37427" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="VP" />
    </name-status-group>
  </nomenclature>
  <nomenclatural-type nomenclatural-type-exemplar="10.1601/ex.5336" xmlns="http://namesforlife.com/ns/common" />
  <taxonomic-equivalence />
  <ancestor doi="10.1601/tx.0" rank="root">
    <nomenclature xmlns="http://namesforlife.com/ns/common">
      <name-status-group>
        <identifier doi="10.1601/nm.0" rank="root" taxon-doi="10.1601/tx.0">Universal Root</identifier>
        <authority>Woese et al. 1990</authority>
        <status candidatus="false" conserved="false" current-name="Universal Root" current-name-doi="10.1601/nm.0" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="NVP" />
      </name-status-group>
    </nomenclature>
    <ancestor doi="10.1601/tx.419" rank="domain">
      <nomenclature xmlns="http://namesforlife.com/ns/common">
        <name-status-group>
          <identifier doi="10.1601/nm.419" rank="domain" taxon-doi="10.1601/tx.419">Bacteria</identifier>
          <authority>(None 2015) Woese et al. 1990</authority>
          <status candidatus="false" conserved="false" current-name="Bacteria" current-name-doi="10.1601/nm.419" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="NVP" />
        </name-status-group>
      </nomenclature>
      <ancestor doi="10.1601/tx.3874" rank="phylum">
        <nomenclature xmlns="http://namesforlife.com/ns/common">
          <name-status-group>
            <identifier doi="10.1601/nm.3874" nomenclatural-type="10.1601/tx.4857" nomenclatural-type-exemplar="10.1601/ex.4858" rank="phylum" taxon-doi="10.1601/tx.3874">Firmicutes</identifier>
            <authority>(sic) Gibbons and Murray 2021</authority>
            <status candidatus="false" conserved="false" current-name="Bacillota" current-name-doi="10.1601/nm.31611" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="NVP" />
          </name-status-group>
          <name-status-group>
            <identifier doi="10.1601/nm.31611" nomenclatural-type="10.1601/tx.4857" nomenclatural-type-exemplar="10.1601/ex.4858" rank="phylum" taxon-doi="10.1601/tx.3874">Bacillota</identifier>
            <authority>corrig. Gibbons and Murray 2021</authority>
            <status candidatus="false" conserved="false" current-name="Bacillota" current-name-doi="10.1601/nm.31611" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
          </name-status-group>
          <name-status-group>
            <identifier doi="10.1601/nm.14085" nomenclatural-type="10.1601/tx.4857" nomenclatural-type-exemplar="10.1601/ex.4858" rank="phylum" taxon-doi="10.1601/tx.3874">Firmacutes</identifier>
            <authority>(sic) Gibbons and Murray 2021</authority>
            <status candidatus="false" conserved="false" current-name="Bacillota" current-name-doi="10.1601/nm.31611" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="NVP" />
          </name-status-group>
        </nomenclature>
        <ancestor doi="10.1601/tx.4854" rank="class">
          <nomenclature xmlns="http://namesforlife.com/ns/common">
            <name-status-group>
              <identifier doi="10.1601/nm.4854" nomenclatural-type="10.1601/tx.4855" nomenclatural-type-exemplar="10.1601/ex.4858" rank="class" taxon-doi="10.1601/tx.4854">Bacilli</identifier>
              <authority>Ludwig et al. 2010</authority>
              <status candidatus="false" conserved="false" current-name="Bacilli" current-name-doi="10.1601/nm.4854" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
            </name-status-group>
          </nomenclature>
          <ancestor doi="10.1601/tx.5318" rank="order">
            <nomenclature xmlns="http://namesforlife.com/ns/common">
              <name-status-group>
                <identifier doi="10.1601/nm.5318" nomenclatural-type="10.1601/tx.5320" nomenclatural-type-exemplar="10.1601/ex.5321" rank="order" taxon-doi="10.1601/tx.5318">Lactobacillales</identifier>
                <authority>Ludwig et al. 2010</authority>
                <status candidatus="false" conserved="false" current-name="Lactobacillales" current-name-doi="10.1601/nm.5318" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
              </name-status-group>
            </nomenclature>
            <ancestor doi="10.1601/tx.5319" rank="family">
              <nomenclature xmlns="http://namesforlife.com/ns/common">
                <name-status-group>
                  <identifier doi="10.1601/nm.5319" nomenclatural-type="10.1601/tx.5320" nomenclatural-type-exemplar="10.1601/ex.5321" rank="family" taxon-doi="10.1601/tx.5319">Lactobacillaceae</identifier>
                  <authority>Winslow et al. 1917 (Approved Lists 1980) emend. Zheng et al. 2020</authority>
                  <status candidatus="false" conserved="false" current-name="Lactobacillaceae" current-name-doi="10.1601/nm.5319" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
                </name-status-group>
              </nomenclature>
              <ancestor doi="10.1601/tx.5320" rank="genus">
                <nomenclature xmlns="http://namesforlife.com/ns/common">
                  <name-status-group>
                    <identifier doi="10.1601/nm.5320" nomenclatural-type="10.1601/tx.10805" nomenclatural-type-exemplar="10.1601/ex.5321" rank="genus" taxon-doi="10.1601/tx.5320">Lactobacillus</identifier>
                    <authority>Beijerinck 1901 (Approved Lists 1980) emend. Zheng et al. 2020</authority>
                    <status candidatus="false" conserved="true" current-name="Lactobacillus" current-name-doi="10.1601/nm.5320" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
                  </name-status-group>
                </nomenclature>
                <ancestor doi="10.1601/tx.10800" rank="species">
                  <nomenclature xmlns="http://namesforlife.com/ns/common">
                    <name-status-group>
                      <identifier doi="10.1601/nm.10800" nomenclatural-type-exemplar="10.1601/ex.5335" rank="species" taxon-doi="10.1601/tx.10800">Lactobacillus aviarius</identifier>
                      <authority>Fujisawa et al. 1985</authority>
                      <status candidatus="false" conserved="false" current-name="Lactobacillus aviarius aviarius" current-name-doi="10.1601/nm.5335" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="VP" />
                    </name-status-group>
                  </nomenclature>
                  <ancestor doi="10.1601/tx.5336" rank="subspecies">
                    <nomenclature xmlns="http://namesforlife.com/ns/common">
                      <name-status-group>
                        <identifier doi="10.1601/nm.5336" nomenclatural-type-exemplar="10.1601/ex.5336" rank="subspecies" taxon-doi="10.1601/tx.5336">Lactobacillus aviarius araffinosus</identifier>
                        <authority>Fujisawa et al. 1986</authority>
                        <status candidatus="false" conserved="false" current-name="Ligilactobacillus araffinosus" current-name-doi="10.1601/nm.37427" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="VP" />
                      </name-status-group>
                    </nomenclature>
                  </ancestor>
                </ancestor>
              </ancestor>
            </ancestor>
          </ancestor>
        </ancestor>
      </ancestor>
    </ancestor>
  </ancestor>
  <parent doi="10.1601/tx.10800" rank="species">
    <nomenclature xmlns="http://namesforlife.com/ns/common">
      <name-status-group>
        <identifier doi="10.1601/nm.10800" nomenclatural-type-exemplar="10.1601/ex.5335" rank="species" taxon-doi="10.1601/tx.10800">Lactobacillus aviarius</identifier>
        <authority>Fujisawa et al. 1985</authority>
        <status candidatus="false" conserved="false" current-name="Lactobacillus aviarius aviarius" current-name-doi="10.1601/nm.5335" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="VP" />
      </name-status-group>
    </nomenclature>
  </parent>
  <sibling doi="10.1601/tx.5335" rank="subspecies">
    <nomenclature xmlns="http://namesforlife.com/ns/common">
      <name-status-group>
        <identifier doi="10.1601/nm.5335" nomenclatural-type-exemplar="10.1601/ex.5335" rank="subspecies" taxon-doi="10.1601/tx.5335">Lactobacillus aviarius aviarius</identifier>
        <authority>Fujisawa et al. 1985</authority>
        <status candidatus="false" conserved="false" current-name="Lactobacillus aviarius aviarius" current-name-doi="10.1601/nm.5335" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
      </name-status-group>
    </nomenclature>
  </sibling>
  <exemplars xmlns="http://namesforlife.com/ns/exemplar">
    <exemplar doi="10.1601/ex.5336" is-uncultivated="false">
      <biosafety-level code="BSL-1" description="BioSafety Level 1" />
      <identifiers>
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="DSM 20653" reference="rid.5596" source="reference" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="CIP 103145" reference="rid.22095" source="reference" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="Mitsuoka ML2" source="bccm" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="CCUG 32231" reference="rid.7367" source="reference" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="JCM 5667" reference="rid.22095" source="reference" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="LMG 18218" source="bccm" />
        <identifier is-laboratory-identifier="true" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="true" label="ML2" reference="rid.5596" source="reference" />
        <identifier is-laboratory-identifier="true" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="Fujisawa ML2" source="ccug" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="LMG 23560" source="bccm" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="ATCC 43235" reference="rid.22095" source="reference" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="LMG 10752" source="bri" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="LMG 23077" source="bccm" />
        <identifier is-laboratory-identifier="false" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="NCFB 2785" source="bccm" />
      </identifiers>
      <features>
        <feature code="10.1601.fr.16S" description="16S gene" id="AB289043" reference="rid.22095" source="reference" url="https://www.ncbi.nlm.nih.gov/nuccore/AB289043" />
        <feature code="10.1601.fr.chromosome" description="Chromosome" id="AYYZ00000000" reference="rid.22095" source="reference" />
        <feature code="10.1601.fr.sample" description="NCBI BioSample" id="SAMN02369423" source="genbank" />
        <feature code="10.1601.fr.16S" description="16S gene" id="JX986976" source="genbank" url="https://www.ncbi.nlm.nih.gov/nuccore/JX986976" />
        <feature code="10.1601.fr.assembly" description="Genome Assembly" id="GCA_001435375" source="genbank" />
        <feature code="10.1601.fr.16S" description="16S gene" id="LC071826" source="genbank" url="https://www.ncbi.nlm.nih.gov/nuccore/LC071826" />
      </features>
      <nomenclature xmlns="http://namesforlife.com/ns/common">
        <name-status-group>
          <identifier doi="10.1601/nm.5336" nomenclatural-type-exemplar="10.1601/ex.5336" rank="subspecies" taxon-doi="10.1601/tx.5336">Lactobacillus aviarius araffinosus</identifier>
          <authority>Fujisawa et al. 1986</authority>
          <status candidatus="false" conserved="false" current-name="Ligilactobacillus araffinosus" current-name-doi="10.1601/nm.37427" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="VP" />
        </name-status-group>
        <name-status-group>
          <identifier doi="10.1601/nm.37427" nomenclatural-type-exemplar="10.1601/ex.5336" rank="species" taxon-doi="10.1601/tx.37427">Ligilactobacillus araffinosus</identifier>
          <authority>(Fujisawa et al. 1986) Zheng et al. 2020</authority>
          <status candidatus="false" conserved="false" current-name="Ligilactobacillus araffinosus" current-name-doi="10.1601/nm.37427" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
        </name-status-group>
      </nomenclature>
      <bibliography xmlns="http://namesforlife.com/ns/reference">
        <reference id="rid.22095">
          <citation citation-type="journal">
            <authors>
              <person-name>
                <surname>Zheng</surname>
                <given-names>J.</given-names>
              </person-name>
              <person-name>
                <surname>Wittouck</surname>
                <given-names>S.</given-names>
              </person-name>
              <person-name>
                <surname>Salvetti</surname>
                <given-names>E.</given-names>
              </person-name>
              <person-name>
                <surname>Franz</surname>
                <given-names>C.M.A.P.</given-names>
              </person-name>
              <person-name>
                <surname>Harris</surname>
                <given-names>H.M.B.</given-names>
              </person-name>
              <person-name>
                <surname>Mattarelli</surname>
                <given-names>P.</given-names>
              </person-name>
              <person-name>
                <surname>O'Toole</surname>
                <given-names>P.W.</given-names>
              </person-name>
              <person-name>
                <surname>Pot</surname>
                <given-names>B.</given-names>
              </person-name>
              <person-name>
                <surname>Vandamme</surname>
                <given-names>P.</given-names>
              </person-name>
              <person-name>
                <surname>Walter</surname>
                <given-names>J.</given-names>
              </person-name>
              <person-name>
                <surname>Watanabe</surname>
                <given-names>K.</given-names>
              </person-name>
              <person-name>
                <surname>Wuyts</surname>
                <given-names>S.</given-names>
              </person-name>
              <person-name>
                <surname>Felis</surname>
                <given-names>G.E.</given-names>
              </person-name>
              <person-name>
                <surname>Gänzle</surname>
                <given-names>M.G.</given-names>
              </person-name>
              <person-name>
                <surname>Lebeer</surname>
                <given-names>S.</given-names>
              </person-name>
            </authors>
            <article-title>A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae.</article-title>
            <year>2020</year>
            <volume>70</volume>
            <issue>4</issue>
            <fpage>2782</fpage>
            <lpage>2858</lpage>
            <source id="117">International Journal of Systematic and Evolutionary Microbiology</source>
            <abbrev>Int J Syst Evol Microbiol</abbrev>
            <issn>1466-5026</issn>
            <essn>1466-5034</essn>
            <pub-id pub-id-type="doi">10.1099/ijsem.0.004107</pub-id>
            <pub-id pub-id-type="pmid">32293557</pub-id>
          </citation>
        </reference>
        <reference id="rid.5596">
          <citation citation-type="journal">
            <authors>
              <person-name>
                <surname>List Editor</surname>
                <given-names />
              </person-name>
            </authors>
            <article-title>Validation List no. 20. Validation of the publication of new names and new combinations previously effectively published outside the IJSB.</article-title>
            <year>1986</year>
            <volume>36</volume>
            <issue>2</issue>
            <fpage>354</fpage>
            <lpage>356</lpage>
            <source id="116">International Journal of Systematic Bacteriology</source>
            <abbrev>Int J Syst Bacteriol</abbrev>
            <issn>0020-7713</issn>
            <pub-id pub-id-type="doi">10.1099/00207713-36-2-354</pub-id>
          </citation>
        </reference>
        <reference id="rid.7367">
          <citation citation-type="journal">
            <authors>
              <person-name>
                <surname>Falsen</surname>
                <given-names>E.</given-names>
              </person-name>
              <person-name>
                <surname>Pascual</surname>
                <given-names>C.</given-names>
              </person-name>
              <person-name>
                <surname>Sjödén</surname>
                <given-names>B.</given-names>
              </person-name>
              <person-name>
                <surname>Ohlén</surname>
                <given-names>M.</given-names>
              </person-name>
              <person-name>
                <surname>Collins</surname>
                <given-names>M.D.</given-names>
              </person-name>
            </authors>
            <article-title>Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov.</article-title>
            <year>1999</year>
            <volume>49</volume>
            <issue>1</issue>
            <fpage>217</fpage>
            <lpage>221</lpage>
            <source id="116">International Journal of Systematic Bacteriology</source>
            <abbrev>Int J Syst Bacteriol</abbrev>
            <issn>0020-7713</issn>
            <pub-id pub-id-type="doi">10.1099/00207713-49-1-217</pub-id>
            <pub-id pub-id-type="pmid">10028266</pub-id>
          </citation>
        </reference>
      </bibliography>
      <annotation xmlns="http://namesforlife.com/ns/common">
        <snapshot date="2024-04-22" date-formatted="April 22, 2024" time="15:33:26" time-formatted="15:33 PM" />
        <modified curator="Charles Parker" date="2020-05-12" date-formatted="May 12, 2020" time="22:26:04" time-formatted="22:26 PM" />
        <created curator="Dorothea Rohlfs" date="2009-11-30" date-formatted="November 30, 2009" time="15:24:36" time-formatted="15:24 PM" />
      </annotation>
    </exemplar>
  </exemplars>
  <bibliography xmlns="http://namesforlife.com/ns/reference">
    <reference id="rid.6494">
      <citation citation-type="journal">
        <authors>
          <person-name>
            <surname>Fujisawa</surname>
            <given-names>T.</given-names>
          </person-name>
          <person-name>
            <surname>Shirasaka</surname>
            <given-names>S.</given-names>
          </person-name>
          <person-name>
            <surname>Watabe</surname>
            <given-names>J.</given-names>
          </person-name>
          <person-name>
            <surname>Mitsuoka</surname>
            <given-names>T.</given-names>
          </person-name>
        </authors>
        <article-title>Lactobacillus aviarius sp. nov.: a new species isolated from the intestine of chickens.</article-title>
        <year>1984</year>
        <volume>5</volume>
        <issue>3</issue>
        <fpage>414</fpage>
        <lpage>420</lpage>
        <source id="121">Systematic and Applied Microbiology</source>
        <abbrev>Syst Appl Microbiol</abbrev>
        <issn>0723-2020</issn>
        <pub-id pub-id-type="doi">10.1016/S0723-2020(84)80042-9</pub-id>
      </citation>
    </reference>
  </bibliography>
  <annotation xmlns="http://namesforlife.com/ns/common">
    <snapshot date="2024-04-22" date-formatted="April 22, 2024" time="15:33:26" time-formatted="15:33 PM" />
    <modified curator="Charles Parker" date="2019-10-14" date-formatted="October 14, 2019" time="19:36:11" time-formatted="19:36 PM" />
    <created curator="Sarah Wigley" date="2008-11-25" date-formatted="November 25, 2008" time="16:17:51" time-formatted="16:17 PM" />
  </annotation>
</taxon>
