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<taxon doi="10.1601/tx.6322" rank="subspecies" xmlns="http://namesforlife.com/ns/taxon">
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      <identifier doi="10.1601/nm.6322" nomenclatural-type-exemplar="10.1601/ex.6389" rank="subspecies" taxon-doi="10.1601/tx.6322">Mycobacterium avium paratuberculosis</identifier>
      <authority>(Bergey et al. 1923) Thorel et al. 1990</authority>
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        <identifier doi="10.1601/nm.0" rank="root" taxon-doi="10.1601/tx.0">Universal Root</identifier>
        <authority>Woese et al. 1990</authority>
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    <ancestor doi="10.1601/tx.419" rank="domain">
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          <identifier doi="10.1601/nm.419" rank="domain" taxon-doi="10.1601/tx.419">Bacteria</identifier>
          <authority>(None 2015) Woese et al. 1990</authority>
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            <identifier doi="10.1601/nm.5711" nomenclatural-type="10.1601/tx.5771" nomenclatural-type-exemplar="10.1601/ex.5772" rank="phylum" taxon-doi="10.1601/tx.5711">Actinobacteria</identifier>
            <authority>(sic) Goodfellow 2021 non Actinobacteria Stackebrandt et al. 1997</authority>
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            <authority>corrig. Goodfellow 2021</authority>
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          </name-status-group>
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            <identifier doi="10.1601/nm.31607" nomenclatural-type="10.1601/tx.5771" nomenclatural-type-exemplar="10.1601/ex.5772" rank="phylum" taxon-doi="10.1601/tx.5711">Actinobacteriota</identifier>
            <authority>corrig. Goodfellow 2021</authority>
            <status candidatus="false" conserved="false" current-name="Actinomycetota" current-name-doi="10.1601/nm.39793" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="NVP" />
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        <ancestor doi="10.1601/tx.17916" rank="class">
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              <identifier doi="10.1601/nm.17916" nomenclatural-type="10.1601/tx.5768" nomenclatural-type-exemplar="10.1601/ex.5772" rank="class" taxon-doi="10.1601/tx.17916">Actinomycetes</identifier>
              <authority>Krasil'nikov 1949 (Approved Lists 1980)</authority>
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            </name-status-group>
          </nomenclature>
          <ancestor doi="10.1601/tx.27023" rank="order">
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              <name-status-group>
                <identifier doi="10.1601/nm.27023" nomenclatural-type="10.1601/tx.6188" nomenclatural-type-exemplar="10.1601/ex.6189" rank="order" taxon-doi="10.1601/tx.27023">Corynebacteriales</identifier>
                <authority>Goodfellow and Jones 2015 emend. Nouioui et al. 2018</authority>
                <status candidatus="false" conserved="false" current-name="Corynebacteriales" current-name-doi="10.1601/nm.27023" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
              </name-status-group>
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            <ancestor doi="10.1601/tx.6309" rank="family">
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                  <identifier doi="10.1601/nm.6309" nomenclatural-type="10.1601/tx.6310" nomenclatural-type-exemplar="10.1601/ex.6311" rank="family" taxon-doi="10.1601/tx.6309">Mycobacteriaceae</identifier>
                  <authority>Chester 1897 (Approved Lists 1980) emend. Gupta et al. 2018</authority>
                  <status candidatus="false" conserved="false" current-name="Mycobacteriaceae" current-name-doi="10.1601/nm.6309" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
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                    <identifier doi="10.1601/nm.6310" nomenclatural-type="10.1601/tx.10886" nomenclatural-type-exemplar="10.1601/ex.6311" rank="genus" taxon-doi="10.1601/tx.6310">Mycobacterium</identifier>
                    <authority>Lehmann and Neumann 1896 (Approved Lists 1980) emend. Meehan et al. 2021</authority>
                    <status candidatus="false" conserved="false" current-name="Mycobacterium" current-name-doi="10.1601/nm.6310" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
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                <ancestor doi="10.1601/tx.10879" rank="species">
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                      <identifier doi="10.1601/nm.10879" nomenclatural-type-exemplar="10.1601/ex.6321" rank="species" taxon-doi="10.1601/tx.10879">Mycobacterium avium</identifier>
                      <authority>Chester 1901 (Approved Lists 1980) emend. Thorel et al. 1990</authority>
                      <status candidatus="false" conserved="true" current-name="Mycobacterium avium avium" current-name-doi="10.1601/nm.6321" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="VP" />
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                  <ancestor doi="10.1601/tx.6322" rank="subspecies">
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                        <identifier doi="10.1601/nm.6322" nomenclatural-type-exemplar="10.1601/ex.6389" rank="subspecies" taxon-doi="10.1601/tx.6322">Mycobacterium avium paratuberculosis</identifier>
                        <authority>(Bergey et al. 1923) Thorel et al. 1990</authority>
                        <status candidatus="false" conserved="false" current-name="Mycobacterium avium paratuberculosis" current-name-doi="10.1601/nm.6322" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
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  <parent doi="10.1601/tx.10879" rank="species">
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      <name-status-group>
        <identifier doi="10.1601/nm.10879" nomenclatural-type-exemplar="10.1601/ex.6321" rank="species" taxon-doi="10.1601/tx.10879">Mycobacterium avium</identifier>
        <authority>Chester 1901 (Approved Lists 1980) emend. Thorel et al. 1990</authority>
        <status candidatus="false" conserved="true" current-name="Mycobacterium avium avium" current-name-doi="10.1601/nm.6321" illegitimate="false" is-current="false" rejected="false" revived="false" status-code="VP" />
      </name-status-group>
    </nomenclature>
  </parent>
  <sibling doi="10.1601/tx.6323" rank="subspecies">
    <nomenclature xmlns="http://namesforlife.com/ns/common">
      <name-status-group>
        <identifier doi="10.1601/nm.6323" nomenclatural-type-exemplar="10.1601/ex.6323" rank="subspecies" taxon-doi="10.1601/tx.6323">Mycobacterium avium silvaticum</identifier>
        <authority>Thorel et al. 1990</authority>
        <status candidatus="false" conserved="false" current-name="Mycobacterium avium silvaticum" current-name-doi="10.1601/nm.6323" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
      </name-status-group>
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  </sibling>
  <sibling doi="10.1601/tx.14878" rank="subspecies">
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        <identifier doi="10.1601/nm.14878" nomenclatural-type-exemplar="10.1601/ex.14878" rank="subspecies" taxon-doi="10.1601/tx.14878">Mycobacterium avium hominissuis</identifier>
        <authority>Mijs et al. 2002</authority>
        <status candidatus="false" conserved="false" current-name="Mycobacterium avium hominissuis" current-name-doi="10.1601/nm.14878" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="NVP" />
      </name-status-group>
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  <sibling doi="10.1601/tx.6321" rank="subspecies">
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        <identifier doi="10.1601/nm.6321" nomenclatural-type-exemplar="10.1601/ex.6321" rank="subspecies" taxon-doi="10.1601/tx.6321">Mycobacterium avium avium</identifier>
        <authority>(Chester 1901) Thorel et al. 1990</authority>
        <status candidatus="false" conserved="false" current-name="Mycobacterium avium avium" current-name-doi="10.1601/nm.6321" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
      </name-status-group>
    </nomenclature>
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    <exemplar doi="10.1601/ex.21442" is-uncultivated="false">
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        <identifier is-laboratory-identifier="true" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="S397" reference="rid.18139" source="reference" />
        <identifier is-laboratory-identifier="true" is-mixed-culture="false" is-non-viable="false" is-patent="false" is-symbiont="false" is-unavailable="false" is-variant="false" label="MAP 397" reference="rid.18139" source="reference" />
      </identifiers>
      <features>
        <feature code="10.1601.fr.GCAT" description="Genome Catalogue Identifier" id="010426_GCAT" source="gold" />
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      <nomenclature xmlns="http://namesforlife.com/ns/common">
        <name-status-group>
          <identifier doi="10.1601/nm.6322" nomenclatural-type-exemplar="10.1601/ex.6389" rank="subspecies" taxon-doi="10.1601/tx.6322">Mycobacterium avium paratuberculosis</identifier>
          <authority>(Bergey et al. 1923) Thorel et al. 1990</authority>
          <status candidatus="false" conserved="false" current-name="Mycobacterium avium paratuberculosis" current-name-doi="10.1601/nm.6322" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
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      </nomenclature>
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        <reference id="rid.18139">
          <citation citation-type="journal">
            <authors>
              <person-name>
                <surname>Bannantine</surname>
                <given-names>J.P.</given-names>
              </person-name>
              <person-name>
                <surname>Wu</surname>
                <given-names>C.-W.</given-names>
              </person-name>
              <person-name>
                <surname>Hsu</surname>
                <given-names>C.</given-names>
              </person-name>
              <person-name>
                <surname>Zhou</surname>
                <given-names>S.</given-names>
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              <person-name>
                <surname>Schwartz</surname>
                <given-names>D.C.</given-names>
              </person-name>
              <person-name>
                <surname>Bayles</surname>
                <given-names>D.O.</given-names>
              </person-name>
              <person-name>
                <surname>Paustian</surname>
                <given-names>M.L.</given-names>
              </person-name>
              <person-name>
                <surname>Alt</surname>
                <given-names>D.P.</given-names>
              </person-name>
              <person-name>
                <surname>Sreevatsan</surname>
                <given-names>S.</given-names>
              </person-name>
              <person-name>
                <surname>Kapur</surname>
                <given-names>V.</given-names>
              </person-name>
              <person-name>
                <surname>Talaat</surname>
                <given-names>A.M.</given-names>
              </person-name>
            </authors>
            <article-title>Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association</article-title>
            <year>2008</year>
            <volume>9</volume>
            <issue>135</issue>
            <source id="1184">BMC Genomics</source>
            <issn>1471-2164</issn>
            <pub-id pub-id-type="doi">10.1186/1471-2164-9-135</pub-id>
            <pub-id pub-id-type="pmid">18366709</pub-id>
          </citation>
        </reference>
        <reference id="rid.18303">
          <citation citation-type="journal">
            <authors>
              <person-name>
                <surname>Bannantine</surname>
                <given-names>J.P.</given-names>
              </person-name>
              <person-name>
                <surname>Wu</surname>
                <given-names>C.-W.</given-names>
              </person-name>
              <person-name>
                <surname>Hsu</surname>
                <given-names>C.</given-names>
              </person-name>
              <person-name>
                <surname>Zhou</surname>
                <given-names>S.</given-names>
              </person-name>
              <person-name>
                <surname>Schwartz</surname>
                <given-names>D.C.</given-names>
              </person-name>
              <person-name>
                <surname>Bayles</surname>
                <given-names>D.O.</given-names>
              </person-name>
              <person-name>
                <surname>Paustian</surname>
                <given-names>M.L.</given-names>
              </person-name>
              <person-name>
                <surname>Alt</surname>
                <given-names>D.P.</given-names>
              </person-name>
              <person-name>
                <surname>Sreevatsan</surname>
                <given-names>S.</given-names>
              </person-name>
              <person-name>
                <surname>Kapur</surname>
                <given-names>V.</given-names>
              </person-name>
              <person-name>
                <surname>Talaat</surname>
                <given-names>A.M.</given-names>
              </person-name>
            </authors>
            <article-title>Genome sequencing of ovine isolates of
Mycobacterium avium subspecies paratuberculosis offers insights into host association</article-title>
            <year>2012</year>
            <volume>13</volume>
            <issue>89</issue>
            <fpage>1</fpage>
            <lpage>13</lpage>
            <source id="1184">BMC Genomics</source>
            <issn>1471-2164</issn>
            <pub-id pub-id-type="doi">10.1186/1471-2164-13-89</pub-id>
            <pub-id pub-id-type="pmid">22409516</pub-id>
          </citation>
        </reference>
      </bibliography>
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        <modified curator="NamesforLife Curator" date="2016-12-21" date-formatted="December 21, 2016" time="18:05:26" time-formatted="18:05 PM" />
        <created curator="Dorothea Rohlfs" date="2011-06-10" date-formatted="June 10, 2011" time="19:04:21" time-formatted="19:04 PM" />
        <public-note>MAP is an abbreviation for  Mycobacterium avium paratuberculosis. S is an abbreviation for Sheep isolate.</public-note>
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      <nomenclature xmlns="http://namesforlife.com/ns/common">
        <name-status-group>
          <identifier doi="10.1601/nm.6322" nomenclatural-type-exemplar="10.1601/ex.6389" rank="subspecies" taxon-doi="10.1601/tx.6322">Mycobacterium avium paratuberculosis</identifier>
          <authority>(Bergey et al. 1923) Thorel et al. 1990</authority>
          <status candidatus="false" conserved="false" current-name="Mycobacterium avium paratuberculosis" current-name-doi="10.1601/nm.6322" illegitimate="false" is-current="true" rejected="false" revived="false" status-code="VP" />
        </name-status-group>
      </nomenclature>
      <bibliography xmlns="http://namesforlife.com/ns/reference">
        <reference id="rid.10264">
          <citation citation-type="journal">
            <authors>
              <person-name>
                <surname>Li</surname>
                <given-names>L.</given-names>
              </person-name>
              <person-name>
                <surname>Bannantine</surname>
                <given-names>J.P.</given-names>
              </person-name>
              <person-name>
                <surname>Zhang</surname>
                <given-names>Q.</given-names>
              </person-name>
              <person-name>
                <surname>Amonsin</surname>
                <given-names>A.</given-names>
              </person-name>
              <person-name>
                <surname>May</surname>
                <given-names>B.J.</given-names>
              </person-name>
              <person-name>
                <surname>Alt</surname>
                <given-names>D.</given-names>
              </person-name>
              <person-name>
                <surname>Banerji</surname>
                <given-names>N.</given-names>
              </person-name>
              <person-name>
                <surname>Kanjilal</surname>
                <given-names>S.</given-names>
              </person-name>
              <person-name>
                <surname>Kapur</surname>
                <given-names>V.</given-names>
              </person-name>
            </authors>
            <article-title>The complete genome sequence of Mycobacterium avium subspecies paratuberculosis</article-title>
            <year>2005</year>
            <volume>102</volume>
            <issue>35</issue>
            <fpage>12344</fpage>
            <lpage>12349</lpage>
            <source id="382">Proceedings of the National Academy of Sciences of the United States of America</source>
            <abbrev>Proc Natl Acad Sci U S A</abbrev>
            <issn>0027-8424</issn>
            <essn>1091-6490</essn>
            <pub-id pub-id-type="doi">10.1073/pnas.0505662102</pub-id>
            <pub-id pub-id-type="pmid">16116077</pub-id>
          </citation>
        </reference>
        <reference id="rid.12444">
          <citation citation-type="journal">
            <authors>
              <person-name>
                <surname>Liolios</surname>
                <given-names>K.</given-names>
              </person-name>
              <person-name>
                <surname>Chen</surname>
                <given-names>I.M.</given-names>
              </person-name>
              <person-name>
                <surname>Mavromatis</surname>
                <given-names>K.</given-names>
              </person-name>
              <person-name>
                <surname>Tavernarakis</surname>
                <given-names>N.</given-names>
              </person-name>
              <person-name>
                <surname>Hugenholtz</surname>
                <given-names>P.</given-names>
              </person-name>
              <person-name>
                <surname>Markowitz</surname>
                <given-names>V.M.</given-names>
              </person-name>
              <person-name>
                <surname>Kyrpides</surname>
                <given-names>N.C.</given-names>
              </person-name>
            </authors>
            <article-title>The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata</article-title>
            <year>2010</year>
            <volume>38</volume>
            <fpage>D346</fpage>
            <lpage>354</lpage>
            <source id="1178">Nucleic Acids Research</source>
            <abbrev>Nucleic Acids Res.</abbrev>
            <issn>0305-1048</issn>
            <essn>1362-4962</essn>
            <pub-id pub-id-type="doi">10.1093/nar/gkp848</pub-id>
            <pub-id pub-id-type="pmid">19914934</pub-id>
          </citation>
        </reference>
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        <modified curator="Charles Parker" date="2016-10-26" date-formatted="October 26, 2016" time="21:04:31" time-formatted="21:04 PM" />
        <created curator="Dorothea Rohlfs" date="2010-01-29" date-formatted="January 29, 2010" time="09:50:10" time-formatted="9:50 AM" />
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            <article-title>Proposal of ATCC 19698 as the Neotype Strain of Mycobacterium paratuberculosis Bergey et al. 1923</article-title>
            <year>1979</year>
            <volume>29</volume>
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            <fpage>263</fpage>
            <lpage>264</lpage>
            <source id="116">International Journal of Systematic Bacteriology</source>
            <abbrev>Int J Syst Bacteriol</abbrev>
            <issn>0020-7713</issn>
            <pub-id pub-id-type="doi">10.1099/00207713-29-3-263</pub-id>
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        <article-title>Numerical taxonomy of mycobactin-dependent mycobacteria, emended description of Mycobacterium avium, and description of Mycobacterium avium subsp. avium subsp. nov., Mycobacterium avium subsp. paratuberculosis subsp. nov., and Mycobacterium avium subsp. silvaticum subsp. nov.</article-title>
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        <source id="116">International Journal of Systematic Bacteriology</source>
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