Taxon DOI
10.1601/tx.10243
Name
 Choi and Cho 2006 emend. Wirth and Whitman 2018
Taxonomic Rank
genus
Methodology
Nomenclatural Taxonomy [1980-2022]
Incertae sedis taxa are placed using SOSCC (Garrity and Lilburn 2008)
Parent
Taxon RecordName Record
Liang et al. 2021
Members
Choi and Cho 2006
(Nogi et al. 2016) Wirth and Whitman 2018 emend. Hördt et al. 2020
(Yi and Chun 2007) Wirth and Whitman 2018
(Park et al. 2015) Wirth and Whitman 2018
Hameed et al. 2013
(Kim et al. 2014) Arahal et al. 2019
Hyun et al. 2013 emend. Hördt et al. 2020
Chen et al. 2011 emend. Hördt et al. 2020
Nogi et al. 2015
Zhu et al. 2021
Arahal et al. 2019
Type Status
Taxonomy
The taxonomic placement of this genus within the root Universal Root.
  Woese et al. 1990
  (None 2015) Woese et al. 1990
  (sic) Garrity et al. 2021
  Garrity et al. 2006
  Garrity et al. 2006 emend. Hördt et al. 2020
  Liang et al. 2021
  Choi and Cho 2006 emend. Wirth and Whitman 2018

The taxonomy from the rank of class and below is based upon currently published taxonomic opinion. For a complete taxonomy, refer to The Taxonomic Outline of Bacteria and Archaea, Release 7.7.
Citation
When referring to this Abstract, please use its Digital Object Identifier.
Taxon Abstract for the genus Shimia Choi and Cho 2006 emend. Wirth and Whitman 2018. Retrieved . https://doi.org/10.1601/tx.10243.
Source File
This information was last reviewed on May 5, 2021.

References

  1. Liang KYH, Orata FD, Boucher YF, Case RJ. Roseobacters in a Sea of Poly- and Paraphyly: Whole Genome-Based Taxonomy of the Family Rhodobacteraceae and the Proposal for the Split of the "Roseobacter Clade" Into a Novel Family, Roseobacteraceae fam. nov. Front. Microbio. 2021; 12:683109-683109. https://doi.org/10.3389/fmicb.2021.683109 [PubMed].
  2. Hyun D-W, Kim M-S, Shin N-R, Kim JY, Kim PS, Whon TW, Yun J-H, Bae J-W. Shimia haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai. Int J Syst Evol Microbiol 2013; 63:4248-4253. https://doi.org/10.1099/ijs.0.053140-0 [PubMed].
  3. Choi DH, Cho BC. Shimia marina gen. nov., sp. nov., a novel bacterium of the Roseobacter clade isolated from biofilm in a coastal fish farm. Int J Syst Evol Microbiol 2006; 56:1869-1873. https://doi.org/10.1099/ijs.0.64235-0 [PubMed].
  4. Chen M-H, Sheu S-Y, Chen CA, Wang J-T, Chen W-M. Shimia isoporae sp. nov., isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol 2011; 61:823-827. https://doi.org/10.1099/ijs.0.022848-0 [PubMed].
  5. Nogi Y, Mori K, Uchida H, Hatada Y. Shimia sagamensis sp. nov., a marine bacterium isolated from the cold-seep in Sagami Bay, Japan. Int J Syst Evol Microbiol 2015; 65:2786-2790. https://doi.org/10.1099/ijs.0.000333 [PubMed].
  6. Zhu S, Chen C, Cheng Y, Guo C, Peng N, Zhang W, He S. Shimia sediminis sp. nov., a bacterium isolated from marine sediment in the East China Sea. Int J Syst Evol Microbiol 2021; 71:. https://doi.org/10.1099/ijsem.0.004782 [PubMed].
  7. Arahal DR, La Mura A, Lucena T, Rodrigo-Torres L, Aznar R, Pujalte MJ. Shimia thalassica sp. nov., and reclassification of Pseudopelagicola gijangensis as Shimia gijangensis comb. nov., and Thalassobius activus as Cognatishimia activa comb. nov. Int J Syst Evol Microbiol 2019; 69:3405-3413. https://doi.org/10.1099/ijsem.0.003629 [PubMed].
  8. Wirth JS, Whitman WB. Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella, Nautella, Pelagibaca, Ruegeria, Thalassobius, Thiobacimonas and Tropicibacter, and the proposal of six novel genera. Int J Syst Evol Microbiol 2018; 68:2393-2411. https://doi.org/10.1099/ijsem.0.002833 [PubMed].
  9. Hameed A, Shahina M, Lin S-Y, Lai W-A, Hsu Y-H, Liu Y-C, Huang Y-M, Young C-C. Shimia biformata sp. nov., isolated from surface seawater, and emended description of the genus Shimia Choi and Cho 2006. Int J Syst Evol Microbiol 2013; 63:4533-4539. https://doi.org/10.1099/ijs.0.053553-0 [PubMed].