Taxon DOI
10.1601/tx.6702
Name
 Lechevalier et al. 1986 emend. Nouioui et al. 2018
Taxonomic Rank
genus
Methodology
Nomenclatural Taxonomy [1980-2022]
Incertae sedis taxa are placed using SOSCC (Garrity and Lilburn 2008)
Parent
Taxon RecordName Record
Embley et al. 1989 emend. Teo et al. 2021
Members
(Pittenger and Brigham 1956) Lechevalier et al. 1986 emend. Nouioui et al. 2018
Teo et al. 2020
Teo et al. 2021
Oyuntsetseg et al. 2017
Li et al. 2022
Mertz and Yao 1993 emend. Nouioui et al. 2018
Lee and Hah 2001
Zhang et al. 2016
Narsing Rao et al. 2020
Wang et al. 2020
Wang et al. 2018
Nouioui et al. 2018
Tan et al. 2006 emend. Nouioui et al. 2018
(Ōmura et al. 1983) Henssen et al. 1987 emend. Nouioui et al. 2018
Wink et al. 2003 emend. Nouioui et al. 2018
Zucchi et al. 2012
Majumdar et al. 2006 emend. Nouioui et al. 2018
Zucchi et al. 2012
Işık et al. 2019
Tatar et al. 2013
Everest and Meyers 2012
Labeda 1995 emend. Nouioui et al. 2018
Wink et al. 2004 emend. Nouioui et al. 2018
Tedsree et al. 2021
Busarakam et al. 2017
Nie et al. 2012
Chaiya et al. 2019
Ding et al. 2007
Miao et al. 2012
Everest and Meyers 2012
Kim et al. 2002
(ex Celmer et al. 1977) Henssen et al. 1987
Zucchi et al. 2012
Tang et al. 2010
Lee 2006
Tamura et al. 2010
Everest and Meyers 2012
(sic) Goodfellow et al. 1997
Lee 2006 emend. Nouioui et al. 2018
Xing et al. 2014
Huang et al. 2021
Labeda et al. 2003
Al-Musallam et al. 2003 emend. Nouioui et al. 2018
Labeda et al. 2003
(Lechevalier et al. 1986) Stackebrandt et al. 2004 emend. Nouioui et al. 2018
Camas et al. 2013
Bian et al. 2009 emend. Nouioui et al. 2018
(Margalith and Beretta 1960) Lechevalier et al. 1986 emend. Nouioui et al. 2018
de Boer et al. 1990
Lee et al. 2006
Groth et al. 2007 emend. Nouioui et al. 2018
Ding et al. 2007 emend. Nouioui et al. 2018
Niu et al. 2020
Penkhrue et al. 2018
Huang et al. 2004
Peng et al. 2019
Tamura et al. 2010
corrig. Mingma et al. 2020
Saintpierre-Bonaccio et al. 2005
Labeda et al. 2003 emend. Nouioui et al. 2018
Tan et al. 2007 emend. Nouioui et al. 2018
Souza et al. 2015
Thawai 2018
Bala et al. 2004 emend. Nouioui et al. 2018
Everest et al. 2015
Zucchi et al. 2012 emend. Busarakam et al. 2016
Huang et al. 2001 emend. Nouioui et al. 2018
(ex di Marco and Spalla 1957) Lechevalier et al. 1986
Carlsohn et al. 2007 emend. Nouioui et al. 2018
Goodfellow et al. 2001 emend. Nouioui et al. 2018
Guan et al. 2012
Duangmal et al. 2011
Jamjan et al. 2018
Everest et al. 2015
Klykleung et al. 2015
Chantavorakit et al. 2019
Lechevalier et al. 1986 emend. Nouioui et al. 2018
Tseng et al. 2006
Chomchoei et al. 2011
Zucchi et al. 2012 emend. Busarakam et al. 2016
Chun et al. 1999 emend. Singh et al. 2021
Zucchi et al. 2012
Wink et al. 2003 emend. Nouioui et al. 2018
Albarracín et al. 2010
Lee 2009
Everest et al. 2013
Wink et al. 2003 emend. Nouioui et al. 2018
Idris et al. 2019
Zucchi et al. 2012
Huang et al. 2021
Chen et al. 2010 emend. Nouioui et al. 2018
None 2015
Type Status
Taxonomy
The taxonomic placement of this genus within the root Universal Root.
  Woese et al. 1990
  (None 2015) Woese et al. 1990
  (sic) Goodfellow 2021 non Actinobacteria Stackebrandt et al. 1997
  Krasil'nikov 1949 (Approved Lists 1980)
  Labeda and Goodfellow 2015
  Embley et al. 1989 emend. Teo et al. 2021
  Lechevalier et al. 1986 emend. Nouioui et al. 2018

The taxonomy from the rank of class and below is based upon currently published taxonomic opinion. For a complete taxonomy, refer to The Taxonomic Outline of Bacteria and Archaea, Release 7.7.
Citation
When referring to this Abstract, please use its Digital Object Identifier.
Taxon Abstract for the genus Amycolatopsis Lechevalier et al. 1986 emend. Nouioui et al. 2018. Retrieved . https://doi.org/10.1601/tx.6702.
Source File
This information was last reviewed on June 24, 2022.

References

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  2. Idris H, Nouioui I, Pathom-Aree W, Castro JF, Bull AT, Andrews BA, Asenjo JA, Goodfellow M. Amycolatopsis vastitatis sp. nov., an isolate from a high altitude subsurface soil on Cerro Chajnantor, northern Chile. Antonie van Leeuwenhoek 2018; 111:1523-1533. https://doi.org/10.1007/s10482-018-1039-3 [PubMed].
  3. Duangmal K, Mingma R, Pathom-aree W, Thamchaipenet A, Inahashi Y, Matsumoto A, Takahashi Y. Amycolatopsis samaneae sp. nov., isolated from roots of Samanea saman (Jacq.) Merr. Int J Syst Evol Microbiol 2011; 61:951-955. https://doi.org/10.1099/ijs.0.022699-0 [PubMed].
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  5. Kim B, Sahin N, Tan GY, Zakrzewska-Czerwinska J, Goodfellow M. Amycolatopsis eurytherma sp. nov., a thermophilic actinomycete isolated from soil. Int J Syst Evol Microbiol 2002; 52:889-894. https://doi.org/10.1099/ijs.0.02060-0 [PubMed].
  6. Zhang G, Wang L, Li J, Zhou Y. Amycolatopsis albispora sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 2016; 66:3860-3864. https://doi.org/10.1099/ijsem.0.001277 [PubMed].
  7. Tedsree N, Tanasupawat S, Sritularak B, Kuncharoen N, Likhitwitayawuid K. Amycolatopsis dendrobii sp. nov., an endophytic actinomycete isolated from Dendrobium heterocarpum Lindl. Int J Syst Evol Microbiol 2021; 71:. https://doi.org/10.1099/ijsem.0.004902 [PubMed].
  8. Al-Musallam AA, Al-Zarban SS, Fasasi YA, Kroppenstedt RM, Stackebrandt E. Amycolatopsis keratiniphila sp. nov., a novel keratinolytic soil actinomycete from Kuwait. Int J Syst Evol Microbiol 2003; 53:871-874. https://doi.org/10.1099/ijs.0.02515-0 [PubMed].
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  11. Oyuntsetseg B, Cho S-H, Jeon SJ, Lee HB, Shin K-S, Kim I-S, Kim SB. Amycolatopsis acidiphila sp. nov., a moderately acidophilic species isolated from coal mine soil. Int J Syst Evol Microbiol 2017; 67:3387-3392. https://doi.org/10.1099/ijsem.0.002126 [PubMed].
  12. Tan GYA, Robinson S, Lacey E, Goodfellow M. Amycolatopsis australiensis sp. nov., an actinomycete isolated from arid soils. Int J Syst Evol Microbiol 2006; 56:2297-2301. https://doi.org/10.1099/ijs.0.64260-0 [PubMed].
  13. Lee SD, Kinkel LL, Samac DA. Amycolatopsis minnesotensis sp. nov., isolated from a prairie soil. Int J Syst Evol Microbiol 2006; 56:265-269. https://doi.org/10.1099/ijs.0.63907-0 [PubMed].
  14. Wink JM, Kroppenstedt RM, Ganguli BN, Nadkarni SR, Schumann P, Seibert G, Stackebrandt E. Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov. Syst Appl Microbiol 2003; 26:38-46. https://doi.org/10.1078/072320203322337290 [PubMed].
  15. Carlsohn MR, Groth I, Tan GY, Schütze B, Saluz HP, Munder T, Yang J, Wink J, Goodfellow M. Amycolatopsis saalfeldensis sp. nov., a novel actinomycete isolated from a medieval alum slate mine. Int J Syst Evol Microbiol 2007; 57:1640-1646. https://doi.org/10.1099/ijs.0.64903-0 [PubMed].
  16. Tang S-K, Wang Y, Guan T-W, Lee J-C, Kim C-J, Li W-J. Amycolatopsis halophila sp. nov., a halophilic actinomycete isolated from a salt lake. Int J Syst Evol Microbiol 2010; 60:1073-1078. https://doi.org/10.1099/ijs.0.012427-0 [PubMed].
  17. Majumdar S, Prabhagaran SR, Shivaji S, Lal R. Reclassification of Amycolatopsis orientalis DSM 43387 as Amycolatopsis benzoatilytica sp. nov. Int J Syst Evol Microbiol 2006; 56:199-204. https://doi.org/10.1099/ijs.0.63766-0 [PubMed].
  18. Chun J, Kim SB, Oh YK, Seong CN, Lee DH, Bae KS, Lee KJ, Kang SO, Hah YC, Goodfellow M. Amycolatopsis thermoflava sp. nov., a novel soil actinomycete from Hainan Island, China. Int J Syst Bacteriol 1999; 49:1369-1373. https://doi.org/10.1099/00207713-49-4-1369 [PubMed].
  19. Saintpierre-Bonaccio D, Amir H, Pineau R, Tan GYA, Goodfellow M. Amycolatopsis plumensis sp. nov., a novel bioactive actinomycete isolated from a New-Caledonian brown hypermagnesian ultramafic soil. Int J Syst Evol Microbiol 2005; 55:2057-2061. https://doi.org/10.1099/ijs.0.63630-0 [PubMed].
  20. Huang J-R, Ming H, Li S, Zhao Z-L, Meng X-L, Zhang J-X, Tang Z, Li W-J, Nie G-X. Amycolatopsis xuchangensis sp. nov. and Amycolatopsis jiguanensis sp. nov., isolated from soil. Antonie van Leeuwenhoek 2016; 109:1423-1431. https://doi.org/10.1007/s10482-016-0742-1 [PubMed].
  21. Lee SD. Amycolatopsis ultiminotia sp. nov., isolated from rhizosphere soil, and emended description of the genus Amycolatopsis. Int J Syst Evol Microbiol 2009; 59:1401-1404. https://doi.org/10.1099/ijs.0.006577-0 [PubMed].
  22. Narsing Rao MP, Li Y-Q, Zhang H, Dong Z-Y, Dhulappa A, Xiao M, Li W-J. Amycolatopsis alkalitolerans sp. nov., isolated from Gastrodia elata Blume. J Antibiot (Tokyo) 2020; 73:35-39. https://doi.org/10.1038/s41429-019-0222-8 [PubMed].
  23. Camas M, Sahin N, Sazak A, Spröer C, Klenk H-P. Amycolatopsis magusensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 2013; 63:1254-1260. https://doi.org/10.1099/ijs.0.042770-0 [PubMed].
  24. Lee SD, Hah YC. Amycolatopsis albidoflavus sp. nov. Int J Syst Evol Microbiol 2001; 51:645-650. https://doi.org/10.1099/00207713-51-2-645 [PubMed].
  25. Huang Y, Paściak M, Liu Z, Xie Q, Gamian A. Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source. Int J Syst Evol Microbiol 2004; 54:359-363. https://doi.org/10.1099/ijs.0.02685-0 [PubMed].
  26. Xing K, Liu W, Zhang Y-J, Bian G-K, Zhang W-D, Tamura T, Lee J-S, Qin S, Jiang J-H. Amycolatopsis jiangsuensis sp. nov., a novel endophytic actinomycete isolated from a coastal plant in Jiangsu, China. Antonie van Leeuwenhoek 2013; 103:433-439. https://doi.org/10.1007/s10482-012-9823-y [PubMed].
  27. de Boer L, Dijkhuizen L, Grobben G, Goodfellow M, Stackebrandt E, Parlett JH, Whitehead D, Witt D. Amycolatopsis methanolica sp. nov., a facultatively methylotrophic actinomycete. Int J Syst Bacteriol 1990; 40:194-204. https://doi.org/10.1099/00207713-40-2-194 [PubMed].
  28. Zucchi TD, Tan GYA, Goodfellow M. Amycolatopsis thermophila sp. nov. and Amycolatopsis viridis sp. nov., thermophilic actinomycetes isolated from arid soil. Int J Syst Evol Microbiol 2012; 62:168-172. https://doi.org/10.1099/ijs.0.029256-0 [PubMed].
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  33. No reference is available 2015
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  35. Everest GJ, Meyers PR. Evaluation of the antibiotic biosynthetic potential of the genus Amycolatopsis and description of Amycolatopsis circi sp. nov., Amycolatopsis equina sp. nov. and Amycolatopsis hippodromi sp. nov. J Appl Microbiol 2011; 111:300-311. https://doi.org/10.1111/j.1365-2672.2011.05058.x [PubMed].
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  37. Souza WR, Silva RE, Goodfellow M, Busarakam K, Figueiro FS, Ferreira D, Rodrigues-Filho E, Moraes LAB, Zucchi TD. Amycolatopsis rhabdoformis sp. nov., an actinomycete isolated from a tropical forest soil. Int J Syst Evol Microbiol 2015; 65:1786-1793. https://doi.org/10.1099/ijs.0.000176 [PubMed].
  38. Labeda DP. Amycolatopsis coloradensis sp. nov., the avoparcin, LL-AV290-producing strain. Int J Syst Bacteriol 1995; 45:124-127. https://doi.org/10.1099/00207713-45-1-124.
  39. Peng G, Xiong D-S, Li L-C, Hu J-Y, Bao S, Chen Y-W, Li Y-Q, Xu L-H, Miao C-P, Zhao L-X. Amycolatopsis panacis sp. nov., isolated from Panax notoginseng rhizospheric soil. Int J Syst Evol Microbiol 2019; 69:567-571. https://doi.org/10.1099/ijsem.0.003202 [PubMed].
  40. Ding L, Hirose T, Yokota A. Amycolatopsis echigonensis sp. nov. and Amycolatopsis niigatensis sp. nov., novel actinomycetes isolated from a filtration substrate. Int J Syst Evol Microbiol 2007; 57:1747-1751. https://doi.org/10.1099/ijs.0.64791-0 [PubMed].
  41. Guan T-W, Xia Z-F, Tang S-K, Wu N, Chen Z-J, Huang Y, Ruan J-S, Li W-J, Zhang L-L. Amycolatopsis salitolerans sp. nov., a filamentous actinomycete isolated from a hypersaline habitat. Int J Syst Evol Microbiol 2012; 62:23-27. https://doi.org/10.1099/ijs.0.030031-0 [PubMed].
  42. Chaiya L, Matsumoto A, Wink J, Inahashi Y, Risdian C, Pathom-Aree W, Lumyong S. Amycolatopsis eburnea sp. nov., an actinomycete associated with arbuscular mycorrhizal fungal spores. Int J Syst Evol Microbiol 2019; 69:3603-3608. https://doi.org/10.1099/ijsem.0.003669 [PubMed].
  43. Chantavorakit T, Suksaard P, Matsumoto A, Duangmal K. Amycolatopsis suaedae sp. nov., an endophytic actinomycete isolated from Suaeda maritima roots. Int J Syst Evol Microbiol 2019; 69:2591-2596. https://doi.org/10.1099/ijsem.0.003546 [PubMed].
  44. Albarracín VH, Alonso-Vega P, Trujillo ME, Amoroso MJ, Abate CM. Amycolatopsis tucumanensis sp. nov., a copper-resistant actinobacterium isolated from polluted sediments. Int J Syst Evol Microbiol 2010; 60:397-401. https://doi.org/10.1099/ijs.0.010587-0 [PubMed].
  45. Everest GJ, le Roes-Hill M, Omorogie C, Cheung S-K, Cook AE, Goodwin CM, Meyers PR. Amycolatopsis umgeniensis sp. nov., isolated from soil from the banks of the Umgeni River in South Africa. Antonie van Leeuwenhoek 2013; 103:673-681. https://doi.org/10.1007/s10482-012-9851-7 [PubMed].
  46. Klykleung N, Tanasupawat S, Pittayakhajonwut P, Ohkuma M, Kudo T. Amycolatopsis stemonae sp. nov., isolated from a Thai medicinal plant. Int J Syst Evol Microbiol 2015; 65:3894-3899. https://doi.org/10.1099/ijsem.0.000509 [PubMed].
  47. Stackebrandt E, Kroppenstedt RM, Wink J, Schumann P. Reclassification of Amycolatopsis orientalis subsp. lurida Lechevalier et al. 1986 as Amycolatopsis lurida sp. nov., comb. nov. Int J Syst Evol Microbiol 2004; 54:267-268. https://doi.org/10.1099/ijs.0.02937-0 [PubMed].
  48. Zucchi TD, Tan GYA, Bonda ANV, Frank S, Kshetrimayum JD, Goodfellow M. Amycolatopsis granulosa sp. nov., Amycolatopsis ruanii sp. nov. and Amycolatopsis thermalba sp. nov., thermophilic actinomycetes isolated from arid soils. Int J Syst Evol Microbiol 2012; 62:1245-1251. https://doi.org/10.1099/ijs.0.031039-0 [PubMed].
  49. Zucchi TD, Bonda ANV, Frank S, Kim B-Y, Kshetrimayum JD, Goodfellow M. Amycolatopsis bartoniae sp. nov. and Amycolatopsis bullii sp. nov., mesophilic actinomycetes isolated from arid Australian soils. Antonie van Leeuwenhoek 2012; 102:91-98. https://doi.org/10.1007/s10482-012-9716-0 [PubMed].
  50. Labeda DP, Donahue JM, Williams NM, Sells SF, Henton MM. Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas. Int J Syst Evol Microbiol 2003; 53:1601-1605. https://doi.org/10.1099/ijs.0.02691-0 [PubMed].
  51. Penkhrue W, Sujarit K, Kudo T, Ohkuma M, Masaki K, Aizawa T, Pathom-Aree W, Khanongnuch C, Lumyong S. Amycolatopsis oliviviridis sp. nov., a novel polylactic acid-bioplastic-degrading actinomycete isolated from paddy soil. Int J Syst Evol Microbiol 2018; 68:1448-1454. https://doi.org/10.1099/ijsem.0.002682 [PubMed].
  52. Groth I, Tan GYA, González JM, Laiz L, Carlsohn MR, Schütze B, Wink J, Goodfellow M. Amycolatopsis nigrescens sp. nov., an actinomycete isolated from a Roman catacomb. Int J Syst Evol Microbiol 2007; 57:513-519. https://doi.org/10.1099/ijs.0.64602-0 [PubMed].
  53. Jamjan W, Suriyachadkun C, Tanasupawat S, Sakai K, Tashiro Y, Okugawa Y, Tongpim S. Amycolatopsis silviterrae sp. nov., isolated from forest soil. Int J Syst Evol Microbiol 2018; 68:1455-1460. https://doi.org/10.1099/ijsem.0.002687 [PubMed].
  54. Wang J, Leiva S, Huang J, Huang Y. Amycolatopsis antarctica sp. nov., isolated from the surface of an Antarctic brown macroalga. Int J Syst Evol Microbiol 2018; 68:2348-2356. https://doi.org/10.1099/ijsem.0.002844 [PubMed].
  55. Wink J, Gandhi J, Kroppenstedt RM, Seibert G, Sträubler B, Schumann P, Stackebrandt E. Amycolatopsis decaplanina sp. nov., a novel member of the genus with unusual morphology. Int J Syst Evol Microbiol 2004; 54:235-239. https://doi.org/10.1099/ijs.0.02586-0 [PubMed].
  56. Tseng M, Yang SF, Li WJ, Jiang CL. Amycolatopsis taiwanensis sp. nov., from soil. Int J Syst Evol Microbiol 2006; 56:1811-1815. https://doi.org/10.1099/ijs.0.64149-0 [PubMed].
  57. Tamura T, Ishida Y, Otoguro M, Suzuki K-i. Amycolatopsis helveola sp. nov. and Amycolatopsis pigmentata sp. nov., isolated from soil. Int J Syst Evol Microbiol 2010; 60:2629-2633. https://doi.org/10.1099/ijs.0.017871-0 [PubMed].
  58. Chen J, Su J-J, We Y-Z, Li Q-P, Yu L-Y, Liu H-Y, Zhang Y-Q, Zhang Y-Q. Amycolatopsis xylanica sp. nov., isolated from soil. Int J Syst Evol Microbiol 2010; 60:2124-2128. https://doi.org/10.1099/ijs.0.016865-0 [PubMed].
  59. Mertz FP, Yao RC. Amycolatopsis alba sp. nov., isolated from soil. Int J Syst Bacteriol 1993; 43:715-720. https://doi.org/10.1099/00207713-43-4-715 [PubMed].
  60. Thawai C. Amycolatopsis rhizosphaerae sp. nov., isolated from rice rhizosphere soil. Int J Syst Evol Microbiol 2018; 68:1546-1551. https://doi.org/10.1099/ijsem.0.002704 [PubMed].
  61. Nie G-X, Ming H, Li S, Zhou E-M, Cheng J, Tang X, Feng H-G, Tang S-K, Li W-J. Amycolatopsis dongchuanensis sp. nov., an actinobacterium isolated from soil. Int J Syst Evol Microbiol 2012; 62:2650-2656. https://doi.org/10.1099/ijs.0.038125-0 [PubMed].
  62. Busarakam K, Brown R, Bull AT, Tan GYA, Zucchi TD, Da Silva LJ, De Souza WR, Goodfellow M. Classification of thermophilic actinobacteria isolated from arid desert soils, including the description of Amycolatopsis deserti sp. nov. Antonie van Leeuwenhoek 2016; 109:319-334. https://doi.org/10.1007/s10482-015-0635-8 [PubMed].
  63. Niu M-M, Ming H, Cheng L-J, Zhao Z-L, Ji W-L, Li M, Yi B-F, Xia T-T, Nie G-X. Amycolatopsis nivea sp. nov., isolated from a Yellow River sample. Int J Syst Evol Microbiol 2020; 70:3084-3090. https://doi.org/10.1099/ijsem.0.004134 [PubMed].
  64. Li R, Wang M, Ren Z, Ji Y, Yin M, Zhou H, Tang S-K. Amycolatopsis aidingensis sp. nov., a Halotolerant Actinobacterium, Produces New Secondary Metabolites. Front. Microbio. 2021; 12:743116-743116. https://doi.org/10.3389/fmicb.2021.743116 [PubMed].
  65. Wang H-F, Li X-Y, Gao R, Xie Y-G, Xiao M, Li Q-L, Li W-J. Amycolatopsis anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis elatior. Int J Syst Evol Microbiol 2020; 70:3391-3398. https://doi.org/10.1099/ijsem.0.004184 [PubMed].
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